Info • Exophiala alcalophila J33 v1.0

Status

[June 2016] The Exophiala alcalophila J33 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Exophiala alcalophila J33 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.70
Sequencing read coverage depth 132x
# of contigs 63
# of scaffolds 40
# of scaffolds >= 2Kbp 39
Scaffold N50 8
Scaffold L50 (Mbp) 1.38
# of gaps 23
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.17, 2.85, 2.29


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 241047918 238573216 99.0%
Ests Trinity_assembled_Illumina_ESTs 25514 24750 97.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1705 1517
transcript 1593 1414
exon 649 385
intron 79 62
description:
protein length (aa) 468 404
exons per gene 2.45 2
# of gene models 12081


Collaborators

John Gladden, Joint Bioenergy Institute (JBEI)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.