Status
[May 2024] The Exophiala sp. D403-30F v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 47.41 |
| Sequencing read coverage depth | 136.16x |
| # of contigs | 513 |
| # of scaffolds | 488 |
| # of scaffolds >= 2Kbp | 369 |
| Scaffold N50 | 16 |
| Scaffold L50 (Mbp) | 0.79 |
| # of gaps | 25 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 3.44, 2.60, 2.12 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 56496 | 55058 | 97.5% |
| Ests | est.fasta | 242410955 | 238170905 | 98.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1765 | 1596 |
| transcript | 1640 | 1482 |
| exon | 622 | 364 |
| intron | 78 | 58 |
| description: | ||
| protein length (aa) | 468 | 405 |
| exons per gene | 2.64 | 2 |
| # of gene models | 17494 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Eurotiomycetes Chaetothyriomycetidae Chaetothyriales Herpotrichiellaceae Exophiala
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
