Status
[May 2024] The Fusarium acuminatum 207A_c7_2 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 42.76 |
| Sequencing read coverage depth | 137.68x |
| # of contigs | 144 |
| # of scaffolds | 126 |
| # of scaffolds >= 2Kbp | 109 |
| Scaffold N50 | 9 |
| Scaffold L50 (Mbp) | 1.82 |
| # of gaps | 18 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 4.64, 2.84, 2.54 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 49218 | 45604 | 92.7% |
| Ests | est.fasta | 219832416 | 217414385 | 98.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1820 | 1567 |
| transcript | 1674 | 1440 |
| exon | 577 | 353 |
| intron | 79 | 57 |
| description: | ||
| protein length (aa) | 481 | 399 |
| exons per gene | 2.90 | 2 |
| # of gene models | 14523 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae Fusarium
- JGI EcoGroup Portals: Plant Pathogens Plant Pathogenic Fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
