Info • Favolaschia claudopus CIRM-BRFM 2984 v1.0

Status

[April 2022] The Favolaschia claudopus CIRM-BRFM 2984 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 264.58
Sequencing read coverage depth 20.47x
# of contigs 461
# of scaffolds 461
# of scaffolds >= 2Kbp 461
Scaffold N50 61
Scaffold L50 (Mbp) 1.46
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.05, 3.58, 3.43


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 157393 149175 94.8%
Ests est.fasta 158828852 157563766 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1674 1415
transcript 1315 1119
exon 229 143
intron 78 56
description:
protein length (aa) 396 325
exons per gene 5.74 4
# of gene models 49883


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Navarro D, Drula E, Chaduli D, Cazenave R, Ahrendt S, Wang J, Lipzen A, Daum C, Barry K, Grigoriev IV, Favel A, Rosso MN, Martin F
Draft genome sequencing and assembly of Favolaschia claudopus CIRM-BRFM 2984 isolated from oak limbs.
J Genomics. 2024;12():44-46. doi: 10.7150/jgen.92255

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.