Status
[April 2016] The Fellomyces polyborus UCDFST 54-35 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2011).
Summary statistics for the Fellomyces polyborus v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 21.05 |
| Sequencing read coverage depth | 97.6x |
| # of contigs | 37 |
| # of scaffolds | 22 |
| # of scaffolds >= 2Kbp | 17 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 2.83 |
| # of gaps | 15 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 4.22, 4.21, 2.83 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 25442 | 24987 | 98.2% |
| Ests | est.fasta | 100110998 | 99900898 | 99.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2027 | 1805 |
| transcript | 1697 | 1480 |
| exon | 276 | 161 |
| intron | 66 | 56 |
| description: | ||
| protein length (aa) | 501 | 428 |
| exons per gene | 6.14 | 5 |
| # of gene models | 8340 |
Collaborators
Jon Magnuson, Pacific Northwest National Laboratory, USA
Joseph Spatafora, Oregon State University, USA
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
