Status
This genome was sequenced by Juliet D. Tang, Andy D. Perkins, Tad S. Sonstegard et al. in Forest Products, Mississippi State University, Mississippi State, Mississippi, USA (Short-read sequencing for genomic analysis of the brown rot fungus Fibroporia radiculosa). Please check their data use policies.
Summary statistics for the Fibroporia radiculosa TFFH 294
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 28.38 |
| Sequencing read coverage depth | 167x |
| # of contigs | 1673 |
| # of scaffolds | 861 |
| # of scaffolds >= 2Kbp | 861 |
| Scaffold N50 | 114 |
| Scaffold L50 (Mbp) | 0.08 |
| # of gaps | 812 |
| % of scaffold length in gaps | 0.6% |
| Three largest Scaffolds (Mbp) | 0.35, 0.26, 0.24 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1817 | 1481 |
| transcript | 1432 | 1179 |
| exon | 221 | 134 |
| intron | 72 | 57 |
| description: | ||
| protein length (aa) | 477 | 393 |
| exons per gene | 6.49 | 5 |
| # of gene models | 9262 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Tang JD, Perkins AD, Sonstegard TS, Schroeder SG, Burgess SC, Diehl SV
Short-read sequencing for genomic analysis of the brown rot fungus Fibroporia radiculosa.
Appl Environ Microbiol. 2012 Apr;78(7):2272-81. doi: 10.1128/AEM.06745-11
Tang JD, Perkins AD, Sonstegard TS, Schroeder SG, Burgess SC, Diehl SV
Short-read sequencing for genomic analysis of the brown rot fungus Fibroporia radiculosa.
Appl Environ Microbiol. 2012 Apr;78(7):2272-81. doi: 10.1128/AEM.06745-11
Funding
This project was not sequenced at the JGI.
