Info • Filobasidium floriforme CBS 6241 v1.0

Status

[January 2020] The Filobasidium floriforme CBS 6241 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Filobasidium floriforme CBS 6241 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.47
Sequencing read coverage depth 430.58x
# of contigs 42
# of scaffolds 42
# of scaffolds >= 2Kbp 42
Scaffold N50 12
Scaffold L50 (Mbp) 0.94
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.29, 1.51, 1.27


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 22957 22344 97.3%
Ests est.fasta 154744748 154163068 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 2222 1976
transcript 1735 1490
exon 268 162
intron 91 74
description:
protein length (aa) 507 425
exons per gene 6.48 5
# of gene models 8319


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Guerreiro MA, Ahrendt S, Pangilinan J, Chen C, Yan M, Lipzen A, Barry K, Grigoriev IV, Begerow D, Nowrousian M
Draft genome sequences of strains CBS6241 and CBS6242 of the basidiomycetous yeast Filobasidium floriforme.
G3 (Bethesda). 2022 Feb 4;12(2):. doi: 10.1093/g3journal/jkab398

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.