Info • Flechtneria rotunda SEV3-VF49 v1.0

Status

[September 2020] The Flechtneria rotunda SEV3-VF49 v1.0 genome was sequenced with PacBio, assembled with MECAT, and annotated using the JGI Annotation Pipeline. The mitochondrial and chloroplast genomes were assembled separately and are available in the downloads section.

Summary statistics for the Flechtneria rotunda SEV3VF49 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 76.78
Sequencing read coverage depth 374.30x
# of contigs 167
# of scaffolds 167
# of scaffolds >= 2Kbp 167
Scaffold N50 9
Scaffold L50 (Mbp) 3.39
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 8.19, 6.36, 4.40


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 677707510 672765461 99.3%
Other JGI_RNA_contigs 114047 104714 91.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 4066 3298
transcript 2413 1932
exon 414 195
intron 345 298
description:
protein length (aa) 418 316
exons per gene 5.82 5
# of gene models 16799


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.