Status
[March 2022] The Fusarium oxysporum f.sp. basilici Amherst-23 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 58.00 |
| Sequencing read coverage depth | 19.08x |
| # of contigs | 70 |
| # of scaffolds | 70 |
| # of scaffolds >= 2Kbp | 68 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 4.25 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 6.55, 5.57, 5.07 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 52115 | 50160 | 96.2% |
| Ests | est.fasta | 217660493 | 216493128 | 99.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1778 | 1541 |
| transcript | 1622 | 1407 |
| exon | 554 | 344 |
| intron | 83 | 56 |
| description: | ||
| protein length (aa) | 468 | 390 |
| exons per gene | 2.93 | 2 |
| # of gene models | 18527 |
Collaborators
- Jeffrey Coleman, Auburn University, USA.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae Fusarium
- JGI EcoGroup Portals: Plant Pathogens
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
