Info • Fonsecaea pedrosoi CBS 271.37

Status

Fonsecaea pedrosoi was sequenced by the Broad Institute as part of the black yeast comparative genomics project. The genome and gene models of Fonsecaea pedrosoi were downloaded from NCBI on June 1, 2016. JGI tools were used to add functional annotations to the gene models. Please note that this copy of the genome is not maintained by NCBI or the Broad Institute and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.

 

Summary statistics for the Fonsecaea pedrosoi release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.69
Sequencing read coverage depth
# of contigs 98
# of scaffolds 11
# of scaffolds >= 2Kbp 10
Scaffold N50 4
Scaffold L50 (Mbp) 4.53
# of gaps 87
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 5.38, 5.21, 5.04


Gene Models ExternalModels
length (bp) of: average median
gene 1590 1410
transcript 1474 1302
exon 600 324
intron 82 62
description:
protein length (aa) 491 434
exons per gene 2.46 2
# of gene models 12527


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Teixeira MM, Moreno LF, Stielow BJ, Muszewska A, Hainaut M, Gonzaga L, Abouelleil A, Patané JS, Priest M, Souza R, Young S, Ferreira KS, Zeng Q, da Cunha MM, Gladki A, Barker B, Vicente VA, de Souza EM, Almeida S, Henrissat B, Vasconcelos AT, Deng S, Voglmayr H, Moussa TA, Gorbushina A, Felipe MS, Cuomo CA, de Hoog GS
Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota).
Stud Mycol. 2017 Mar;86():1-28. doi: 10.1016/j.simyco.2017.01.001

Funding

This project was not sequenced at the JGI.