Status
[February 2020] The Fusarium oxysporum MRL8996 genome was sequenced by Ayhan,D.H., Yang,H., Pearlman,E. and Ma,L.-J. with Illumina and PacBio, and assembled with SPAdes v. 3.9.1. The assembly was annotated using the JGI Annotation Pipeline.
Summary statistics for the Fusarium oxysporum MRL8996 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 50.07 |
| Sequencing read coverage depth | 184.0x |
| # of contigs | 250 |
| # of scaffolds | 250 |
| # of scaffolds >= 2Kbp | 231 |
| Scaffold N50 | 10 |
| Scaffold L50 (Mbp) | 1.73 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 4.65, 4.58, 2.81 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 47130 | 45641 | 96.8% |
| Ests | est.fasta | 190612210 | 189523972 | 99.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1775 | 1533 |
| transcript | 1606 | 1386 |
| exon | 531 | 323 |
| intron | 86 | 56 |
| description: | ||
| protein length (aa) | 473 | 395 |
| exons per gene | 3.02 | 2 |
| # of gene models | 16631 |
Collaborators
Li-Jun Ma, University of Massachusetts Amherst, USA
Links
JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreales Nectriaceae Fusarium
Funding
This project was not sequenced at the JGI.
