Status
The Fugacium kawagutii CCMP2468 (previously known as Symbiodinium kawagutii) genome assembly and gene models have not been determined by the JGI, but were downloaded from the the ReFuGe 2020 Consortium on 16th of July 2020. Please note that this copy of the genome is not maintained by ReFuGe 2020 Consortium and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Fugacium kawagutii CCMP2468 are
below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 1048.48 |
| Sequencing read coverage depth | |
| # of contigs | 98070 |
| # of scaffolds | 16959 |
| # of scaffolds >= 2Kbp | 15441 |
| Scaffold N50 | 1145 |
| Scaffold L50 (Mbp) | 0.27 |
| # of gaps | 81111 |
| % of scaffold length in gaps | 15.2% |
| Three largest Scaffolds (Mbp) | 5.16, 3.34, 2.72 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 6507 | 4247 |
| transcript | 1736 | 1077 |
| exon | 199 | 77 |
| intron | 621 | 319 |
| description: | ||
| protein length (aa) | 578 | 359 |
| exons per gene | 8.70 | 6 |
| # of gene models | 26609 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Lin S, Cheng S, Song B, Zhong X, Lin X, Li W, Li L, Zhang Y, Zhang H, Ji Z, Cai M, Zhuang Y, Shi X, Lin L, Wang L, Wang Z, Liu X, Yu S, Zeng P, Hao H, Zou Q, Chen C, Li Y, Wang Y, Xu C, Meng S, Xu X, Wang J, Yang H, Campbell DA, Sturm NR, Dagenais-Bellefeuille S, Morse D
The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis.
Science. 2015 Nov 6;350(6261):691-4. doi: 10.1126/science.aad0408
Liu H, Stephens TG, González-Pech RA, Beltran VH, Lapeyre B, Bongaerts P, Cooke I, Aranda M, Bourne DG, Forêt S, Miller DJ, van Oppen MJH, Voolstra CR, Ragan MA, Chan CX
Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis.
Commun Biol. 2018;1():95. doi: 10.1038/s42003-018-0098-3
Lin S, Cheng S, Song B, Zhong X, Lin X, Li W, Li L, Zhang Y, Zhang H, Ji Z, Cai M, Zhuang Y, Shi X, Lin L, Wang L, Wang Z, Liu X, Yu S, Zeng P, Hao H, Zou Q, Chen C, Li Y, Wang Y, Xu C, Meng S, Xu X, Wang J, Yang H, Campbell DA, Sturm NR, Dagenais-Bellefeuille S, Morse D
The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis.
Science. 2015 Nov 6;350(6261):691-4. doi: 10.1126/science.aad0408
Liu H, Stephens TG, González-Pech RA, Beltran VH, Lapeyre B, Bongaerts P, Cooke I, Aranda M, Bourne DG, Forêt S, Miller DJ, van Oppen MJH, Voolstra CR, Ragan MA, Chan CX
Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis.
Commun Biol. 2018;1():95. doi: 10.1038/s42003-018-0098-3
Funding
This project was not sequenced at the JGI.
