Info • Fugacium kawagutii CCMP2468


The Fugacium kawagutii CCMP2468 (previously known as Symbiodinium kawagutii) genome assembly and gene models have not been determined by the JGI, but were downloaded from the the ReFuGe 2020 Consortium on 16th of July 2020. Please note that this copy of the genome is not maintained by ReFuGe 2020 Consortium and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Fugacium kawagutii CCMP2468 are below.
Genome Assembly
Genome Assembly size (Mbp) 1048.48
Sequencing read coverage depth
# of contigs 98070
# of scaffolds 16959
# of scaffolds >= 2Kbp 15441
Scaffold N50 1145
Scaffold L50 (Mbp) 0.27
# of gaps 81111
% of scaffold length in gaps 15.2%
Three largest Scaffolds (Mbp) 5.16, 3.34, 2.72

Gene Models ExternalModels
length (bp) of: average median
gene 6507 4247
transcript 1736 1077
exon 199 77
intron 621 319
protein length (aa) 578 359
exons per gene 8.70 6
# of gene models 26609

Genome Reference(s)



This project was not sequenced at the JGI.