Status
[December 2023] The Fusarium oxysporum 105B_c14_1 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 51.57 |
| Sequencing read coverage depth | 125.42x |
| # of contigs | 676 |
| # of scaffolds | 651 |
| # of scaffolds >= 2Kbp | 565 |
| Scaffold N50 | 24 |
| Scaffold L50 (Mbp) | 0.55 |
| # of gaps | 25 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.71, 2.04, 1.92 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 52289 | 50166 | 95.9% |
| Ests | est.fasta | 162010556 | 160848205 | 99.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1732 | 1499 |
| transcript | 1576 | 1368 |
| exon | 535 | 321 |
| intron | 82 | 56 |
| description: | ||
| protein length (aa) | 460 | 382 |
| exons per gene | 2.95 | 2 |
| # of gene models | 17464 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae Fusarium
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
