Info • Fusarium fujikuroi IMI 58289

Status

This genome was sequenced by Philipp Wiemann, Bettina Tudzynski ([email protected]) et. al. in Institut für Biologie und Biotechnologie der Pflanzen, Molecular Biology and Biotee chnology of Fungi, Westfälische Wilhelms-Universität Münster.

Summary statistics for the Fusarium fujikuroi IMI 58289 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.83
Sequencing read coverage depth 19x
# of contigs 46
# of scaffolds 12
# of scaffolds >= 2Kbp 12
Scaffold N50 5
Scaffold L50 (Mbp) 4.23
# of gaps 34
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 6.56, 5.04, 5.04


Gene Models ExternalModels
length (bp) of: average median
gene 1582 1359
transcript 1457 1239
exon 519 294
intron 71 55
description:
protein length (aa) 486 413
exons per gene 2.81 2
# of gene models 14813


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Wiemann P, Sieber CM, von Bargen KW, Studt L, Niehaus EM, Espino JJ, Huß K, Michielse CB, Albermann S, Wagner D, Bergner SV, Connolly LR, Fischer A, Reuter G, Kleigrewe K, Bald T, Wingfield BD, Ophir R, Freeman S, Hippler M, Smith KM, Brown DW, Proctor RH, Münsterkötter M, Freitag M, Humpf HU, Güldener U, Tudzynski B
Deciphering the cryptic genome: genome-wide analyses of the rice pathogen Fusarium fujikuroi reveal complex regulation of secondary metabolism and novel metabolites.
PLoS Pathog. 2013;9(6):e1003475. doi: 10.1371/journal.ppat.1003475

Funding

This project was not sequenced at the JGI.