Status
The genome of Fusarium graminearum strain PH-1 was sequenced by the BROAD Institute. In order to allow comparative analyses with other fungi, a copy of the genome of F. graminearum is incorporated into MycoCosm. It was downloaded from the website of the BROAD Institute on May 20th, 2011.
Summary statistics for the Fusarium graminearum v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 36.45 |
| Sequencing read coverage depth | unknown |
| # of contigs | 433 |
| # of scaffolds | 31 |
| # of scaffolds >= 2Kbp | 31 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 5.35 |
| # of gaps | 402 |
| % of scaffold length in gaps | 0.6% |
| Three largest Scaffolds (Mbp) | 8.93, 5.45, 5.35 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1582 | 1355 |
| transcript | 1430 | 1206 |
| exon | 508 | 284 |
| intron | 86 | 58 |
| description: | ||
| protein length (aa) | 445 | 366 |
| exons per gene | 2.82 | 2 |
| # of gene models | 13322 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Cuomo CA, Güldener U, Xu JR, Trail F, Turgeon BG, Di Pietro A, Walton JD, Ma LJ, Baker SE, Rep M, Adam G, Antoniw J, Baldwin T, Calvo S, Chang YL, Decaprio D, Gale LR, Gnerre S, Goswami RS, Hammond-Kosack K, Harris LJ, Hilburn K, Kennell JC, Kroken S, Magnuson JK, Mannhaupt G, Mauceli E, Mewes HW, Mitterbauer R, Muehlbauer G, Münsterkötter M, Nelson D, O'donnell K, Ouellet T, Qi W, Quesneville H, Roncero MI, Seong KY, Tetko IV, Urban M, Waalwijk C, Ward TJ, Yao J, Birren BW, Kistler HC
The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization.
Science. 2007 Sep 7;317(5843):1400-2. doi: 10.1126/science.1143708
Cuomo CA, Güldener U, Xu JR, Trail F, Turgeon BG, Di Pietro A, Walton JD, Ma LJ, Baker SE, Rep M, Adam G, Antoniw J, Baldwin T, Calvo S, Chang YL, Decaprio D, Gale LR, Gnerre S, Goswami RS, Hammond-Kosack K, Harris LJ, Hilburn K, Kennell JC, Kroken S, Magnuson JK, Mannhaupt G, Mauceli E, Mewes HW, Mitterbauer R, Muehlbauer G, Münsterkötter M, Nelson D, O'donnell K, Ouellet T, Qi W, Quesneville H, Roncero MI, Seong KY, Tetko IV, Urban M, Waalwijk C, Ward TJ, Yao J, Birren BW, Kistler HC
The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization.
Science. 2007 Sep 7;317(5843):1400-2. doi: 10.1126/science.1143708
Funding
This project was not sequenced at the JGI.
