Info • Fusarium oxysporum f. sp. conglutinans race 2 54008 (PHW808)

Status

The genome sequence and gene predictions of Fusarium oxysporum f. sp. conglutinans race 2 54008 (PHW808) have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 1, 2019. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Fusarium oxysporum f. sp. conglutinans race 2 54008 (PHW808) release are below.
Genome Assembly
Genome Assembly size (Mbp) 53.58
Sequencing read coverage depth 124x
# of contigs 3350
# of scaffolds 2552
# of scaffolds >= 2Kbp 1951
Scaffold N50 78
Scaffold L50 (Mbp) 0.16
# of gaps 798
% of scaffold length in gaps 0.7%
Three largest Scaffolds (Mbp) 0.94, 0.89, 0.84


Gene Models ExternalModels
length (bp) of: average median
gene 2238 1857
transcript 2089 1724
exon 718 424
intron 80 56
description:
protein length (aa) 437 369
exons per gene 2.91 2
# of gene models 26246


Collaborators

Li-Jun Ma, University of Massachusetts Amherst, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

DeIulio GA, Guo L, Zhang Y, Goldberg JM, Kistler HC, Ma LJ
Kinome Expansion in the Fusarium oxysporum Species Complex Driven by Accessory Chromosomes.
mSphere. 2018 Jun 27;3(3):. doi: 10.1128/mSphere.00231-18

Funding

This project was not sequenced at the JGI.