Info • Fusarium oxysporum f. sp. lycopersici MN25 (FoMN25) NRRL 54003

Status

The genome sequence and gene predictions of Fusarium oxysporum f. sp. lycopersici MN25 (FoMN25) NRRL 54003 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 1, 2019. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Fusarium oxysporum f. sp. lycopersici MN25 (FoMN25) NRRL 54003 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.64
Sequencing read coverage depth 210x
# of contigs 801
# of scaffolds 388
# of scaffolds >= 2Kbp 326
Scaffold N50 8
Scaffold L50 (Mbp) 2.09
# of gaps 413
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 4.60, 4.21, 3.10


Gene Models ExternalModels
length (bp) of: average median
gene 2393 2034
transcript 2235 1878
exon 735 436
intron 79 56
description:
protein length (aa) 459 389
exons per gene 3.04 3
# of gene models 24733


Collaborators

Li-Jun Ma, University of Massachusetts Amherst, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

DeIulio GA, Guo L, Zhang Y, Goldberg JM, Kistler HC, Ma LJ
Kinome Expansion in the Fusarium oxysporum Species Complex Driven by Accessory Chromosomes.
mSphere. 2018 Jun 27;3(3):. doi: 10.1128/mSphere.00231-18

Funding

This project was not sequenced at the JGI.