Info • Fusarium oxysporum f. sp. melonis (FoMelon) NRRL 26406

Status

The genome sequence and gene predictions of Fusarium oxysporum f. sp. melonis (FoMelon) NRRL 26406 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 1, 2019. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Fusarium oxysporum f. sp. melonis (FoMelon) NRRL 26406 release are below.
Genome Assembly
Genome Assembly size (Mbp) 54.03
Sequencing read coverage depth 157x
# of contigs 1825
# of scaffolds 1146
# of scaffolds >= 2Kbp 767
Scaffold N50 7
Scaffold L50 (Mbp) 2.21
# of gaps 679
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 6.35, 5.24, 4.29


Gene Models ExternalModels
length (bp) of: average median
gene 2325 1950
transcript 2167 1797
exon 722 426
intron 81 56
description:
protein length (aa) 448 378
exons per gene 3.00 3
# of gene models 26719


Collaborators

Li-Jun Ma, University of Massachusetts Amherst, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Ma LJ, Shea T, Young S, Zeng Q, Kistler HC
Genome Sequence of Fusarium oxysporum f. sp. melonis Strain NRRL 26406, a Fungus Causing Wilt Disease on Melon.
Genome Announc. 2014 Jul 31;2(4):. doi: 10.1128/genomeA.00730-14

Funding

This project was not sequenced at the JGI.