Info • Fusarium oxysporum f. sp. vasinfectum 25433 (Cotton)

Status

The genome sequence and gene predictions of Fusarium oxysporum f. sp. vasinfectum 25433 (Cotton) have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 1, 2019. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Fusarium oxysporum f. sp. vasinfectum 25433 (Cotton) release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.91
Sequencing read coverage depth 165x
# of contigs 1947
# of scaffolds 985
# of scaffolds >= 2Kbp 812
Scaffold N50 26
Scaffold L50 (Mbp) 0.42
# of gaps 962
% of scaffold length in gaps 0.9%
Three largest Scaffolds (Mbp) 3.36, 2.17, 1.85


Gene Models ExternalModels
length (bp) of: average median
gene 2314 1943
transcript 2159 1790
exon 727 433
intron 81 56
description:
protein length (aa) 453 383
exons per gene 2.97 3
# of gene models 25216


Collaborators

Li-Jun Ma, University of Massachusetts Amherst, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

DeIulio GA, Guo L, Zhang Y, Goldberg JM, Kistler HC, Ma LJ
Kinome Expansion in the Fusarium oxysporum Species Complex Driven by Accessory Chromosomes.
mSphere. 2018 Jun 27;3(3):. doi: 10.1128/mSphere.00231-18

Funding

This project was not sequenced at the JGI.