Info • Fusarium proliferatum NRRL 62905

Status

The Fusarium proliferatum NRRL 62905 genome sequence and gene models were not determined by the Joint Genome Institute (JGI) but were downloaded from Ensembl Fungi on Apr 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add the functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 43.17
Sequencing read coverage depth
# of contigs 166
# of scaffolds 155
# of scaffolds >= 2Kbp 122
Scaffold N50 16
Scaffold L50 (Mbp) 0.87
# of gaps 11
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.24, 1.82, 1.76


Gene Models ExternalModels
length (bp) of: average median
gene 1568 1356
transcript 1452 1239
exon 520 293
intron 67 55
description:
protein length (aa) 484 413
exons per gene 2.79 2
# of gene models 15254


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Niehaus EM, Münsterkötter M, Proctor RH, Brown DW, Sharon A, Idan Y, Oren-Young L, Sieber CM, Novák O, Pěnčík A, Tarkowská D, Hromadová K, Freeman S, Maymon M, Elazar M, Youssef SA, El-Shabrawy ES, Shalaby AB, Houterman P, Brock NL, Burkhardt I, Tsavkelova EA, Dickschat JS, Galuszka P, Güldener U, Tudzynski B
Comparative "Omics" of the Fusarium fujikuroi Species Complex Highlights Differences in Genetic Potential and Metabolite Synthesis.
Genome Biol Evol. 2016 Dec 31;8(11):3574-3599. doi: 10.1093/gbe/evw259

Funding

This project was not sequenced at the JGI.