Status
The genome sequence and gene prediction of Fusarium pseudograminearum CS3096 have not been determined by the JGI, but were downloaded from NCBI on June 1, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Assembly Method :: CLCBio Genomics Workbench v. 3 (April
2010)
Sequencing Technology :: Illumina GA; Illumina GAIIx
Summary statistics for the Fusarium pseudograminearum
CS3096 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 36.33 |
| Sequencing read coverage depth | 180X |
| # of contigs | 381 |
| # of scaffolds | 4 |
| # of scaffolds >= 2Kbp | 4 |
| Scaffold N50 | 2 |
| Scaffold L50 (Mbp) | 8.84 |
| # of gaps | 377 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 11.69, 8.84, 8.08 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1610 | 1356 |
| transcript | 1462 | 1221 |
| exon | 513 | 268 |
| intron | 82 | 56 |
| description: | ||
| protein length (aa) | 487 | 407 |
| exons per gene | 2.85 | 2 |
| # of gene models | 12395 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Gardiner DM, McDonald MC, Covarelli L, Solomon PS, Rusu AG, Marshall M, Kazan K, Chakraborty S, McDonald BA, Manners JM
Comparative pathogenomics reveals horizontally acquired novel virulence genes in fungi infecting cereal hosts.
PLoS Pathog. 2012 Sep;8(9):e1002952. doi: 10.1371/journal.ppat.1002952
Gardiner DM, McDonald MC, Covarelli L, Solomon PS, Rusu AG, Marshall M, Kazan K, Chakraborty S, McDonald BA, Manners JM
Comparative pathogenomics reveals horizontally acquired novel virulence genes in fungi infecting cereal hosts.
PLoS Pathog. 2012 Sep;8(9):e1002952. doi: 10.1371/journal.ppat.1002952
Funding
This project was not sequenced at the JGI.
