Info • Fusarium tricinctum MPI-SDFR-AT-0068 v1.0

Status

[June 2018] The Fusarium tricinctum MPI-SDFR-AT-0068 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium tricinctum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.69
Sequencing read coverage depth 256.94x
# of contigs 21
# of scaffolds 21
# of scaffolds >= 2Kbp 20
Scaffold N50 4
Scaffold L50 (Mbp) 5.21
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.21, 6.80, 6.14


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 32989 32400 98.2%
Ests est.fasta 178198812 176951736 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1818 1568
transcript 1670 1449
exon 574 356
intron 80 57
description:
protein length (aa) 484 404
exons per gene 2.91 2
# of gene models 14106


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.