Status
The Fusarium vanettenii T219 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 52.60 |
| Sequencing read coverage depth | |
| # of contigs | 109 |
| # of scaffolds | 109 |
| # of scaffolds >= 2Kbp | 108 |
| Scaffold N50 | 16 |
| Scaffold L50 (Mbp) | 1.00 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.86, 2.69, 2.34 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 45025 | 43982 | 97.7% |
| Ests | est.fasta | 58643825 | 58323253 | 99.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1794 | 1573 |
| transcript | 1647 | 1437 |
| exon | 560 | 345 |
| intron | 78 | 56 |
| description: | ||
| protein length (aa) | 477 | 407 |
| exons per gene | 2.94 | 2 |
| # of gene models | 17132 |
Collaborators
- Jeffrey Coleman, Auburn University, USA.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae Fusarium
- JGI EcoGroup Portals: Plant pathogens Plant pathogenic fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
