Status
The Fusarium vanettenii T23 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 61.89 |
| Sequencing read coverage depth | |
| # of contigs | 195 |
| # of scaffolds | 195 |
| # of scaffolds >= 2Kbp | 193 |
| Scaffold N50 | 26 |
| Scaffold L50 (Mbp) | 0.74 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.48, 1.82, 1.75 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 50296 | 47178 | 93.8% |
| Ests | est.fasta | 78156068 | 77442295 | 99.1% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1780 | 1560 |
| transcript | 1623 | 1416 |
| exon | 541 | 330 |
| intron | 80 | 56 |
| description: | ||
| protein length (aa) | 472 | 400 |
| exons per gene | 3.00 | 2 |
| # of gene models | 18783 |
Collaborators
- Jeffrey Coleman, Auburn University, USA.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae Fusarium
- JGI EcoGroup Portals: Plant pathogens Plant pathogenic fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
