Info • Fusarium vanettenii T31 FSSC 11 v1.0

Status

[May 2021] The Fusarium vanettenii T31 FSSC 11 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 52.05
Sequencing read coverage depth 44.36x
# of contigs 36
# of scaffolds 36
# of scaffolds >= 2Kbp 36
Scaffold N50 9
Scaffold L50 (Mbp) 2.36
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.28, 3.74, 3.67


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35733 34789 97.4%
Ests est.fasta 24870054 24733989 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1790 1562
transcript 1633 1424
exon 544 335
intron 80 57
description:
protein length (aa) 483 412
exons per gene 3.00 3
# of gene models 16729


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.