Info • Ganoderma boninense G3 v1.0

Status

The genome sequence of Ganoderma boninense was assembled with wtdbg2 v. 4 and HiRise v. 1 from Illumina HiSeq and PacBio data.

 

[June 2021] The genome was downloaded from NCBI BioProject PRJNA421251 on August 2020. The annotation was done by Emmanuelle Morin of INRAE using the JGI Annotation Pipeline.

This copy of the genome does not include the mitochondrial chromosome or genes.

Summary statistics for the Ganoderma boninense v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 79.19
Sequencing read coverage depth 50x
# of contigs 495
# of scaffolds 495
# of scaffolds >= 2Kbp 495
Scaffold N50 83
Scaffold L50 (Mbp) 0.27
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.45, 1.26, 1.12


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 351741095 339862326 96.6%
Other Ganbon1_RNA_contigs 76726 58456 76.2%


Gene Models FilteredModels2
length (bp) of: average median
gene 1789 1530
transcript 1330 1125
exon 212 142
intron 89 62
description:
protein length (aa) 406 337
exons per gene 6.26 5
# of gene models 19834


Genome Reference(s)

Funding

This project was not sequenced at the JGI.