Status
The genome sequence of Ganoderma boninense was assembled with wtdbg2 v. 4 and HiRise v. 1 from Illumina HiSeq and PacBio data.
[June 2021] The genome was downloaded from NCBI BioProject PRJNA421251 on August 2020. The annotation was done by Emmanuelle Morin of INRAE using the JGI Annotation Pipeline.
This copy of the genome does not include the mitochondrial chromosome or genes.
Summary statistics for the Ganoderma boninense v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 79.19 |
| Sequencing read coverage depth | 50x |
| # of contigs | 495 |
| # of scaffolds | 495 |
| # of scaffolds >= 2Kbp | 495 |
| Scaffold N50 | 83 |
| Scaffold L50 (Mbp) | 0.27 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.45, 1.26, 1.12 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 351741095 | 339862326 | 96.6% |
| Other | Ganbon1_RNA_contigs | 76726 | 58456 | 76.2% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1789 | 1530 |
| transcript | 1330 | 1125 |
| exon | 212 | 142 |
| intron | 89 | 62 |
| description: | ||
| protein length (aa) | 406 | 337 |
| exons per gene | 6.26 | 5 |
| # of gene models | 19834 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Utomo C, Tanjung ZA, Aditama R, Buana RFN, Pratomo ADM, Tryono R, Liwang T
Draft Genome Sequence of the Phytopathogenic Fungus Ganoderma boninense, the Causal Agent of Basal Stem Rot Disease on Oil Palm.
Genome Announc. 2018 Apr 26;6(17):. doi: 10.1128/genomeA.00122-18
Utomo C, Tanjung ZA, Aditama R, Buana RFN, Pratomo ADM, Tryono R, Liwang T
Draft Genome Sequence of the Phytopathogenic Fungus Ganoderma boninense, the Causal Agent of Basal Stem Rot Disease on Oil Palm.
Genome Announc. 2018 Apr 26;6(17):. doi: 10.1128/genomeA.00122-18
Funding
This project was not sequenced at the JGI.
