Status
[December 2018] The Geastrum triplex GST.BST genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.
Summary statistics for the Geastrum triplex GST.BST v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 58.57 |
| Sequencing read coverage depth | 146.6x |
| # of contigs | 4253 |
| # of scaffolds | 1666 |
| # of scaffolds >= 2Kbp | 1309 |
| Scaffold N50 | 160 |
| Scaffold L50 (Mbp) | 0.10 |
| # of gaps | 2587 |
| % of scaffold length in gaps | 23.1% |
| Three largest Scaffolds (Mbp) | 0.78, 0.68, 0.54 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1556 | 1321 |
| transcript | 1195 | 981 |
| exon | 197 | 126 |
| intron | 73 | 58 |
| description: | ||
| protein length (aa) | 398 | 327 |
| exons per gene | 6.06 | 5 |
| # of gene models | 14309 |
Collaborators
- Joseph Spatafora, Oregon State University, OR, USA
Links
- 1000 Fungal Genomes Project
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Geastrales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
