Status
The genome of Glomerella acutata was sequenced using Illumina technology and assembled using AllPathsLG (version R42328).
Summary statistics for the Glomerella acutata v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 50.04 |
| Sequencing read coverage depth | 87x |
| # of contigs | 378 |
| # of scaffolds | 307 |
| # of scaffolds >= 2Kbp | 292 |
| Scaffold N50 | 44 |
| Scaffold L50 (Mbp) | 0.36 |
| # of gaps | 71 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.13, 1.00, 0.97 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | RNNotator-assembled Illumina ESTs | 43534 | 41239 | 94.7% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1695 | 1493 |
| transcript | 1531 | 1333 |
| exon | 542 | 345 |
| intron | 92 | 64 |
| description: | ||
| protein length (aa) | 440 | 374 |
| exons per gene | 2.83 | 2 |
| # of gene models | 15777 |
Collaborators
- Francis Martin, INRA Nancy, France
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
