Status
The genome of Glomerella cingulata was sequenced using Illumina technology and assembled using AllPathsLG (version R42328).
Summary statistics for the Glomerella cingulata v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 58.84 |
| Sequencing read coverage depth | 113.6x |
| # of contigs | 774 |
| # of scaffolds | 119 |
| # of scaffolds >= 2Kbp | 97 |
| Scaffold N50 | 9 |
| Scaffold L50 (Mbp) | 2.30 |
| # of gaps | 655 |
| % of scaffold length in gaps | 0.7% |
| Three largest Scaffolds (Mbp) | 5.52, 4.80, 4.10 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | RNNotator-assembled Illumina ESTs | 45733 | 44112 | 96.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1604 | 1376 |
| transcript | 1437 | 1230 |
| exon | 516 | 318 |
| intron | 95 | 60 |
| description: | ||
| protein length (aa) | 431 | 363 |
| exons per gene | 2.79 | 2 |
| # of gene models | 18975 |
Collaborators
- Francis Martin, INRA Nancy, France
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
