Info • Galdieria sulphuraria MS1

Status

The Galdieria sulphuraria MS1 genome sequence and gene models have not been determined by the JGI, but were downloaded from the Red Algal Resources to Promote Integrative Research in Algal Genomics webpage on October 31, 2019. Please note that this copy of the genome is not maintained by Red Algal Resources and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Galdieria sulphuraria MS1 release are below.
Genome Assembly
Genome Assembly size (Mbp) 14.91
Sequencing read coverage depth
# of contigs 129
# of scaffolds 129
# of scaffolds >= 2Kbp 129
Scaffold N50 32
Scaffold L50 (Mbp) 0.17
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.33, 0.33, 0.32


Gene Models ExternalModels
length (bp) of: average median
gene 1434 1146
transcript 1247 999
exon 324 177
intron 64 53
description:
protein length (aa) 416 333
exons per gene 3.85 3
# of gene models 7441


Genome Reference(s)

Funding

This project was not sequenced at the JGI.