Info • Galdieria sulphuraria MtSh

Status

The Galdieria sulphuraria MtSh genome sequence and gene models were not determined by the Joint Genome Insitute, but were downloaded from the Red Algal Resources to Promote Integrative Research in Algal Genomics webpage on October 31, 2019. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 532 external models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by Rossoni et al. and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 15.00
Sequencing read coverage depth 101.95x
# of contigs 101
# of scaffolds 101
# of scaffolds >= 2Kbp 101
Scaffold N50 29
Scaffold L50 (Mbp) 0.19
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.50, 0.43, 0.39


Gene Models FilteredModels1
length (bp) of: average median
gene 1683 1315
transcript 1471 1170
exon 330 198
intron 60 52
description:
protein length (aa) 490 390
exons per gene 4.46 3
# of gene models 5628


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.