Status
The Galdieria sulphuraria RT22 genome sequence and gene models have not been determined by the JGI, but were downloaded from the Red Algal Resources to Promote Integrative Research in Algal Genomics webpage on October 31, 2019. Please note that this copy of the genome is not maintained by Red Algal Resources and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Galdieria sulphuraria RT22
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 15.63 |
Sequencing read coverage depth | |
# of contigs | 118 |
# of scaffolds | 118 |
# of scaffolds >= 2Kbp | 118 |
Scaffold N50 | 32 |
Scaffold L50 (Mbp) | 0.17 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 0.46, 0.33, 0.33 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1615 | 1259 |
transcript | 1422 | 1122 |
exon | 362 | 175 |
intron | 65 | 53 |
description: | ||
protein length (aa) | 474 | 374 |
exons per gene | 3.93 | 3 |
# of gene models | 6982 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Rossoni AW, Price DC, Seger M, Lyska D, Lammers P, Bhattacharya D, Weber AP
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions.
Elife. 2019 May 31;8():. doi: 10.7554/eLife.45017
Rossoni AW, Price DC, Seger M, Lyska D, Lammers P, Bhattacharya D, Weber AP
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions.
Elife. 2019 May 31;8():. doi: 10.7554/eLife.45017
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals: Archaeplastida Rhodophyta Bangiophyceae
Funding
This project was not sequenced at the JGI.