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Info • Guillardia theta CCMP2712

Status

Assembly v1 (October 2010) is a draft assembly of mainly Sanger gDNA reads supplemented by 454 gDNA reads. A total of 670 scaffolds and 87.2 Mbp were assembled using Arachne.

Summary statistics for the Guillardia theta v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 87.16
Sequencing read coverage depth 23.66x
# of contigs 9586
# of scaffolds 670
# of scaffolds >= 2Kbp 638
Scaffold N50 52
Scaffold L50 (Mbp) 0.55
# of gaps 4458
% of scaffold length in gaps 4.2%
Three largest Scaffolds (Mbp) 1.42, 1.30, 1.29


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests JGI ESTs 45645 40729 89.2%
Ests NCBI ESTs 15173 11287 74.4%
Other EST cluster consensi 14142 11932 84.4%


Gene Models FilteredModels4
length (bp) of: average median
gene 1868 1353
transcript 1283 927
exon 199 85
intron 110 55
description:
protein length (aa) 410 293
exons per gene 6.43 4
# of gene models 24840


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.