Status
[Aug 2013] The Gymnascella aurantiaca genome was sequenced using the Illumina platform and assembled with AllPathsLG (Gnerre et al., 2010).
Summary statistics for the Gymnascella aurantiaca NRRL
5967 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 25.35 |
| Sequencing read coverage depth | 143.9x |
| # of contigs | 356 |
| # of scaffolds | 347 |
| # of scaffolds >= 2Kbp | 256 |
| Scaffold N50 | 42 |
| Scaffold L50 (Mbp) | 0.21 |
| # of gaps | 9 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.76, 0.44, 0.42 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | RNNotator assembled Illumina ESTs | 22892 | 22324 | 97.5% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1790 | 1521 |
| transcript | 1610 | 1353 |
| exon | 516 | 301 |
| intron | 87 | 64 |
| description: | ||
| protein length (aa) | 474 | 385 |
| exons per gene | 3.12 | 3 |
| # of gene models | 9106 |
Collaborators
Joseph Spatafora, Oregon State University, USA
Kerry O'Donnell, USDA, ARS.
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
