Status
The Haematococcus lacustris NIES-144 genome sequence and gene models have not been determined by the JGI, but were downloaded from GenBank on July 09, 2021. Please note that this copy of the genome is not maintained by GenBank and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Genome Assembly | |
Genome Assembly size (Mbp) | 171.79 |
Sequencing read coverage depth | |
# of contigs | 36608 |
# of scaffolds | 9693 |
# of scaffolds >= 2Kbp | 7180 |
Scaffold N50 | 1334 |
Scaffold L50 (Mbp) | 0.04 |
# of gaps | 26915 |
% of scaffold length in gaps | 25.6% |
Three largest Scaffolds (Mbp) | 0.22, 0.21, 0.20 |
Gene Models | KU_gene_models | |
length (bp) of: | average | median |
gene | 1873 | 1209 |
transcript | 555 | 402 |
exon | 128 | 105 |
intron | 393 | 262 |
description: | ||
protein length (aa) | 185 | 134 |
exons per gene | 4.33 | 3 |
# of gene models | 28279 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Morimoto D, Yoshida T, Sawayama S
Draft Genome Sequence of the Astaxanthin-Producing Microalga Haematococcus lacustris Strain NIES-144.
Microbiol Resour Announc. 2020 Jun 4;9(23):. doi: 10.1128/MRA.00128-20
Morimoto D, Yoshida T, Sawayama S
Draft Genome Sequence of the Astaxanthin-Producing Microalga Haematococcus lacustris Strain NIES-144.
Microbiol Resour Announc. 2020 Jun 4;9(23):. doi: 10.1128/MRA.00128-20
Links
- JGI EcoGroup Portal: Algae
- JGI PhyloGroup Portals: Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales
Funding
This project was not sequenced at the JGI.