Info • Helicocarpus griseus UAMH 5409

Status

The genome sequence and gene models of Helicocarpus griseus UAMH 5409 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.


Genome Assembly
Genome Assembly size (Mbp) 32.04
Sequencing read coverage depth
# of contigs 595
# of scaffolds 546
# of scaffolds >= 2Kbp 500
Scaffold N50 78
Scaffold L50 (Mbp) 0.12
# of gaps 49
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.46, 0.43, 0.41


Gene Models ExternalModels
length (bp) of: average median
gene 1641 1385
transcript 1454 1203
exon 469 255
intron 91 72
description:
protein length (aa) 485 401
exons per gene 3.10 3
# of gene models 10224


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Muñoz JF, McEwen JG, Clay OK, Cuomo CA
Genome analysis reveals evolutionary mechanisms of adaptation in systemic dimorphic fungi.
Sci Rep. 2018 Mar 14;8(1):4473. doi: 10.1038/s41598-018-22816-6

Funding

This project was not sequenced at the JGI.