Status
[April 2024] The Hirsutella rhossiliensis 206A_T18_1 v2.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 81.02 |
| Sequencing read coverage depth | 42.48x |
| # of contigs | 98 |
| # of scaffolds | 98 |
| # of scaffolds >= 2Kbp | 98 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 5.20 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 11.92, 8.87, 5.93 |
RNA was contaminated with rRNA and Penicillium reads leading to the lower than expected mapping seen below.
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 76257 | 41878 | 54.9% |
| Ests | est.fasta | 147929910 | 122214885 | 82.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1859 | 1558 |
| transcript | 1674 | 1401 |
| exon | 579 | 348 |
| intron | 100 | 65 |
| description: | ||
| protein length (aa) | 472 | 372 |
| exons per gene | 2.89 | 2 |
| # of gene models | 11403 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Ophiocordycipitaceae
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
