Status
The Hondaea fermentalgiana genome sequence and gene models have not been determined by the JGI, but were downloaded from GenBank on April 26, 2021. Please note that this copy of the genome is not maintained by GenBank and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 38.94 |
| Sequencing read coverage depth | |
| # of contigs | 4504 |
| # of scaffolds | 2232 |
| # of scaffolds >= 2Kbp | 406 |
| Scaffold N50 | 47 |
| Scaffold L50 (Mbp) | 0.24 |
| # of gaps | 2272 |
| % of scaffold length in gaps | 0.6% |
| Three largest Scaffolds (Mbp) | 1.10, 0.94, 0.90 |
| Gene Models | CEA_gene_models | |
| length (bp) of: | average | median |
| gene | 2108 | 1498 |
| transcript | 1824 | 1353 |
| exon | 1100 | 768 |
| intron | 435 | 254 |
| description: | ||
| protein length (aa) | 608 | 451 |
| exons per gene | 1.66 | 1 |
| # of gene models | 11853 |
Collaborators
- Olivier Cagnac at Fermentalg.
- Alberto Amato at LPCV.
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Seddiki K, Godart F, Aiese Cigliano R, Sanseverino W, Barakat M, Ortet P, Rébeillé F, Maréchal E, Cagnac O, Amato A
Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3.
Genome Announc. 2018 Mar 15;6(11):. doi: 10.1128/genomeA.01335-17
Seddiki K, Godart F, Aiese Cigliano R, Sanseverino W, Barakat M, Ortet P, Rébeillé F, Maréchal E, Cagnac O, Amato A
Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3.
Genome Announc. 2018 Mar 15;6(11):. doi: 10.1128/genomeA.01335-17
Links
- JGI PhyloGroup Portals: Heterokonta Labyrinthulomycota
Funding
This project was not sequenced at the JGI.
