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Info • Hondaea fermentalgiana CCAP_4062/3

Status

The Hondaea fermentalgiana genome sequence and gene models have not been determined by the JGI, but were downloaded from GenBank on April 26, 2021. Please note that this copy of the genome is not maintained by GenBank and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 38.94
Sequencing read coverage depth
# of contigs 4504
# of scaffolds 2232
# of scaffolds >= 2Kbp 406
Scaffold N50 47
Scaffold L50 (Mbp) 0.24
# of gaps 2272
% of scaffold length in gaps 0.6%
Three largest Scaffolds (Mbp) 1.10, 0.94, 0.90


Gene Models CEA_gene_models
length (bp) of: average median
gene 2108 1498
transcript 1824 1353
exon 1100 768
intron 435 254
description:
protein length (aa) 608 451
exons per gene 1.66 1
# of gene models 11853


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.