Info • Hypoxylon sp. FL0543 v1.0

Status

[March 2019] The Hypoxylon sp. FL0543 genome was sequenced with Illumina, assembled with SPAdes v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Hypoxylon sp. FL0543 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.12
Sequencing read coverage depth 124.88928818x
# of contigs 76
# of scaffolds 62
# of scaffolds >= 2Kbp 59
Scaffold N50 8
Scaffold L50 (Mbp) 1.36
# of gaps 14
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.60, 3.23, 2.57


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 44884 43126 96.1%
Ests est.fasta 109740755 108038618 98.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2009 1795
transcript 1845 1641
exon 628 398
intron 87 64
description:
protein length (aa) 482 406
exons per gene 2.94 3
# of gene models 10873


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.