Info • Hypoxylon sp. FL0890 v1.0

Status

[March 2019] The Hypoxylon sp. FL0890 genome was sequenced with Illumina, assembled with SPAdes v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Hypoxylon sp. FL0890 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.41
Sequencing read coverage depth 145.548008047x
# of contigs 107
# of scaffolds 83
# of scaffolds >= 2Kbp 79
Scaffold N50 16
Scaffold L50 (Mbp) 0.83
# of gaps 24
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.00, 1.81, 1.61


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36605 33607 91.8%
Ests est.fasta 114585243 112116343 97.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1987 1751
transcript 1825 1604
exon 622 394
intron 86 64
description:
protein length (aa) 479 401
exons per gene 2.93 2
# of gene models 11210


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.