Info • Hypoxylon sp. NC0597 v1.0

Status

[March 2019] The Hypoxylon sp. NC0597 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Hypoxylon sp. NC0597 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.92
Sequencing read coverage depth 319.09x
# of contigs 97
# of scaffolds 97
# of scaffolds >= 2Kbp 97
Scaffold N50 17
Scaffold L50 (Mbp) 0.66
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.33, 1.61, 1.56


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 60372 58860 97.5%
Ests est.fasta 214005750 207672025 97.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 2007 1790
transcript 1836 1630
exon 614 382
intron 88 65
description:
protein length (aa) 481 405
exons per gene 2.99 3
# of gene models 11188


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.