The Hyaloperonospora arabidopsidis Emoy2 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from ENSEMBL on Dec 1, 2020. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 5183 models from H. arabidopsidis and the generation of the FilteredModels3 gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by ENSEMBL and is therefore not automatically updated. In order to allow comparative analyses with other fungal and algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.