Info • Hymenoscyphus varicosporoides PMI_453 v1.0

Status

[November 2016] The Hymenoscyphus varicosporoides PMI_453 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hymenoscyphus varicosporoides PMI_453 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.24
Sequencing read coverage depth 145.62x
# of contigs 106
# of scaffolds 106
# of scaffolds >= 2Kbp 103
Scaffold N50 15
Scaffold L50 (Mbp) 1.16
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.72, 2.53, 2.31


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 38849 38295 98.6%
Ests est.fasta 93432432 93245889 99.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1725 1504
transcript 1570 1358
exon 515 318
intron 78 56
description:
protein length (aa) 462 383
exons per gene 3.05 3
# of gene models 14929


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.