Info • Hyphochytrium catenoides ATCC 18719


The Hyphochytrium catenoides genome sequence and gene models have not been determined by the JGI, but were downloaded from BioStudies on August 08, 2021. Please note that this copy of the genome is not maintained by BioStudies and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 68.54
Sequencing read coverage depth
# of contigs 55462
# of scaffolds 53358
# of scaffolds >= 2Kbp 3513
Scaffold N50 516
Scaffold L50 (Mbp) 0.03
# of gaps 2104
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 0.46, 0.39, 0.32

Gene Models UE_nuclear_gene_models
length (bp) of: average median
gene 1809 1408
transcript 1058 823
exon 228 141
intron 208 161
protein length (aa) 338 256
exons per gene 4.64 3
# of gene models 18481

Genome Reference(s)



This project was not sequenced at the JGI.