Status
The Hyphochytrium catenoides genome sequence and gene models have not been determined by the JGI, but were downloaded from BioStudies on August 08, 2021. Please note that this copy of the genome is not maintained by BioStudies and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 68.54 |
| Sequencing read coverage depth | |
| # of contigs | 55462 |
| # of scaffolds | 53358 |
| # of scaffolds >= 2Kbp | 3513 |
| Scaffold N50 | 516 |
| Scaffold L50 (Mbp) | 0.03 |
| # of gaps | 2104 |
| % of scaffold length in gaps | 0.3% |
| Three largest Scaffolds (Mbp) | 0.46, 0.39, 0.32 |
| Gene Models | UE_nuclear_gene_models | |
| length (bp) of: | average | median |
| gene | 1809 | 1408 |
| transcript | 1058 | 823 |
| exon | 228 | 141 |
| intron | 208 | 161 |
| description: | ||
| protein length (aa) | 338 | 256 |
| exons per gene | 4.64 | 3 |
| # of gene models | 18481 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Leonard G, Labarre A, Milner DS, Monier A, Soanes D, Wideman JG, Maguire F, Stevens S, Sain D, Grau-Bové X, Sebé-Pedrós A, Stajich JE, Paszkiewicz K, Brown MW, Hall N, Wickstead B, Richards TA
Comparative genomic analysis of the 'pseudofungus' Hyphochytrium catenoides.
Open Biol. 2018 Jan;8(1):. doi: 10.1098/rsob.170184
Leonard G, Labarre A, Milner DS, Monier A, Soanes D, Wideman JG, Maguire F, Stevens S, Sain D, Grau-Bové X, Sebé-Pedrós A, Stajich JE, Paszkiewicz K, Brown MW, Hall N, Wickstead B, Richards TA
Comparative genomic analysis of the 'pseudofungus' Hyphochytrium catenoides.
Open Biol. 2018 Jan;8(1):. doi: 10.1098/rsob.170184
Links
- JGI PhyloGroup Portals: Heterokonta
Funding
This project was not sequenced at the JGI.
