Info • Hypoxylon fuscum CBS 119018 v1.0

Status

[June 2019] The Hypoxylon fuscum CBS 119018 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hypoxylon fuscum CBS 119018 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.05
Sequencing read coverage depth 110.248857883523x
# of contigs 570
# of scaffolds 552
# of scaffolds >= 2Kbp 439
Scaffold N50 64
Scaffold L50 (Mbp) 0.19
# of gaps 18
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.64, 0.61, 0.57


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 47348 46726 98.7%
Ests est.fasta 153881199 153137535 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1982 1764
transcript 1813 1602
exon 611 386
intron 88 65
description:
protein length (aa) 478 401
exons per gene 2.96 3
# of gene models 12268


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.