Info • Hypoxylon monticulosum FL0542 v1.0

Status

[March 2019] The Hypoxylon monticulosum FL0542 genome was sequenced with Illumina, assembled with SPAdes v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Hypoxylon monticulosum FL0542 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.44
Sequencing read coverage depth 139.166588056x
# of contigs 162
# of scaffolds 157
# of scaffolds >= 2Kbp 142
Scaffold N50 18
Scaffold L50 (Mbp) 0.74
# of gaps 5
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.17, 2.15, 1.51


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34214 32478 94.9%
Ests est.fasta 112221591 110501200 98.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 2020 1790
transcript 1858 1636
exon 628 398
intron 85 63
description:
protein length (aa) 492 412
exons per gene 2.96 2
# of gene models 12167


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.