Info • Hypoxylon submonticulosum NC0708 v2.0

Status

[December 2019] The Hypoxylon submonticulosum NC0708 v2.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hypoxylon submonticulosum v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.05
Sequencing read coverage depth 392.49x
# of contigs 123
# of scaffolds 123
# of scaffolds >= 2Kbp 122
Scaffold N50 15
Scaffold L50 (Mbp) 0.92
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.98, 1.92, 1.80


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 50712 50033 98.7%
Ests est.fasta 236435217 235091538 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2012 1786
transcript 1847 1629
exon 628 397
intron 87 64
description:
protein length (aa) 482 406
exons per gene 2.94 3
# of gene models 11421


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.