Info • Hypoxylon trugodes CBS 135444 v1.0

Status

[June 2019] The Hypoxylon trugodes CBS 135444 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hypoxylon trugodes CBS 135444 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.35
Sequencing read coverage depth 135.878269646x
# of contigs 74
# of scaffolds 74
# of scaffolds >= 2Kbp 60
Scaffold N50 5
Scaffold L50 (Mbp) 3.59
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.87, 4.36, 4.16


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45710 45028 98.5%
Ests est.fasta 172402837 171270776 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 2010 1785
transcript 1852 1629
exon 622 394
intron 82 63
description:
protein length (aa) 485 408
exons per gene 2.98 3
# of gene models 11996


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.