Status
[June 2024] The Nectriaceae sp. 308B_c4_1 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 76.24 |
| Sequencing read coverage depth | 31.75x |
| # of contigs | 88 |
| # of scaffolds | 88 |
| # of scaffolds >= 2Kbp | 88 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 3.57 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 6.68, 5.57, 5.52 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 67196 | 63282 | 94.2% |
| Ests | est.fasta | 255261294 | 252378098 | 98.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1783 | 1525 |
| transcript | 1599 | 1373 |
| exon | 538 | 329 |
| intron | 95 | 61 |
| description: | ||
| protein length (aa) | 468 | 383 |
| exons per gene | 2.97 | 2 |
| # of gene models | 21520 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae
- JGI EcoGroup Portals: Endophytic Fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
