Status
The genome of Ilyonectria sp. was sequenced using Illumina technology and assembled with AllPathsLG release version R41043.
Summary statistics for the Ilyonectria sp. v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 63.66 |
| Sequencing read coverage depth | 153.5x |
| # of contigs | 950 |
| # of scaffolds | 325 |
| # of scaffolds >= 2Kbp | 280 |
| Scaffold N50 | 9 |
| Scaffold L50 (Mbp) | 2.89 |
| # of gaps | 625 |
| % of scaffold length in gaps | 0.8% |
| Three largest Scaffolds (Mbp) | 6.02, 4.60, 4.12 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | RNNotator-assembled Illumina ESTs | 46390 | 42538 | 91.7% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1609 | 1377 |
| transcript | 1448 | 1235 |
| exon | 515 | 323 |
| intron | 91 | 60 |
| description: | ||
| protein length (aa) | 428 | 354 |
| exons per gene | 2.81 | 2 |
| # of gene models | 22250 |
Collaborators
- Francis Martin, INRA Nancy, France
- Rytas Vilgalys, Duke University, USA
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Liao HL, Bonito G, Rojas JA, Hameed K, Wu S, Schadt CW, Labbé J, Tuskan GA, Martin F, Grigoriev IV, Vilgalys R
Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition.
Mol Plant Microbe Interact. 2019 Jul;32(7):853-864. doi: 10.1094/MPMI-05-18-0133-R
Liao HL, Bonito G, Rojas JA, Hameed K, Wu S, Schadt CW, Labbé J, Tuskan GA, Martin F, Grigoriev IV, Vilgalys R
Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition.
Mol Plant Microbe Interact. 2019 Jul;32(7):853-864. doi: 10.1094/MPMI-05-18-0133-R
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
